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24 lines
891 B
Text
24 lines
891 B
Text
// Nextflow config file for running on Google Cloud Life Sciences
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params {
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config_profile_description = 'Google Cloud Life Sciences Profile'
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config_profile_contact = 'Evan Floden, Seqera Labs (@evanfloden)'
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config_profile_url = 'https://cloud.google.com/life-sciences'
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google_zone = 'europe-west2-c'
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google_bucket = false
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google_debug = false
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google_preemptible = true
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}
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process.executor = 'google-lifesciences'
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google.zone = params.google_zone
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google.lifeSciences.debug = params.google_debug
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workDir = params.google_bucket
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google.lifeSciences.preemptible = params.google_preemptible
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if (google.lifeSciences.preemptible) {
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process.errorStrategy = { task.exitStatus in [8,10,14] ? 'retry' : 'terminate' }
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process.maxRetries = 5
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}
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process.machineType = { task.memory > task.cpus * 6.GB ? ['custom', task.cpus, task.cpus * 6656].join('-') : null }
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