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nf-configs/conf/cheaha.config
2022-01-28 14:18:57 -06:00

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params {
config_profile_name = 'cheaha'
config_profile_description = 'University of Alabama at Birmingham Cheaha HPC'
config_profile_contact = 'Lara Ianov (lianov@uab.edu) or Austyn Trull (atrull@uab.edu)'
config_profile_url = 'https://www.uab.edu/cores/ircp/bds'
}
singularity {
enabled = true
autoMounts = true
}
process {
executor = 'slurm'
queue = { task.memory <= 50.GB ? (task.time <= 2.h ? 'express' : task.time <= 12.h ? 'short' : task.time <= 50.h ? 'medium' : 'long') : (task.time <= 50.h ? 'largemem' : 'largemem-long')}
maxRetries = 3
beforeScript = 'module load Singularity'
}
params {
max_memory = 750.GB
max_cpus = 128
max_time = 150.h
}