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https://github.com/MillironX/nf-configs.git
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0830203b70
Updating README and fixing linting errors in CCGA_MED profile Fixing order in profile queue and removed leading slash from readme for ccga profile docs Fixing order in profile queue and removed leading slash from readme for ccga profile docs
29 lines
1.2 KiB
YAML
29 lines
1.2 KiB
YAML
name: Configs tests
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on: [pull_request, push]
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jobs:
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test_all_profiles:
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runs-on: ubuntu-latest
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name: Check if all profiles are tested
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steps:
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- uses: actions/checkout@v1
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- name: Check whether profiles are all tested
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run: |
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python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml
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profile_test:
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runs-on: ubuntu-latest
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name: Run ${{ matrix.profile }} profile
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needs: test_all_profiles
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strategy:
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matrix:
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profile: ['awsbatch', 'bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'ccga', 'cfc', 'crick', 'denbi_qbic', 'genotoul', 'genouest', 'gis', 'hebbe', 'kraken', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hex', 'uppmax', 'uzh']
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steps:
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- uses: actions/checkout@v1
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- name: Install Nextflow
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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- name: Check ${{ matrix.profile }} profile
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env:
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SCRATCH: '~'
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run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}
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