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nf-configs/conf/cbe.config
2021-08-27 14:01:34 +02:00

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//Profile config names for nf-core/configs
params {
config_profile_description = 'CLIP BATCH ENVIRONMENT (CBE) cluster profile provided by nf-core/configs'
config_profile_contact = 'Patrick Hüther (@phue)'
config_profile_url = 'https://clip.science'
}
process {
executor = 'slurm'
queue = { task.memory <= 170.GB ? 'c' : 'm' }
module = 'anaconda3/2019.10'
// --signal option will be handled by nextflow after 21.10.0 release (see https://github.com/nextflow-io/nextflow/issues/2163)
clusterOptions = { '--signal B:USR2 ' << ( task.time <= 1.h ? '--qos rapid' : ( task.time <= 8.h ? '--qos short': ( task.time <= 48.h ? '--qos medium' : '--qos long' ) ) ) }
}
singularity {
enabled = true
cacheDir = '/resources/containers'
}
params {
params.max_time = 14.d
params.max_cpus = 36
params.max_memory = 1800.GB
igenomes_base = '/resources/references/igenomes'
}