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nf-configs/conf/imperial.config
2020-12-18 15:34:56 +00:00

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//Profile config names for nf-core/configs
params {
// Config Params
config_profile_description = 'Imperial College London - HPC Profile -- provided by nf-core/configs.'
config_profile_contact = 'Combiz Khozoie (c.khozoie@imperial.ac.uk)'
config_profile_url = 'https://www.imperial.ac.uk/admin-services/ict/self-service/research-support/rcs/'
// Resources
max_memory = 256.GB
max_cpus = 32
max_time = 72.h
}
executor {
$pbspro {
queueSize = 50
}
$local {
cpus = 2
queueSize = 1
memory = '32 GB'
}
}
singularity {
enabled = true
autoMounts = true
runOptions = "-B /rds/,/rdsgpfs/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp"
}
process {
executor = 'pbspro'
}