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nf-configs/conf/pipeline/atacseq/eddie.config
ameynert 6e201a71f4
ATAC-seq pipeline config
Java processes with overhead memory requirements
2021-03-30 16:31:00 +01:00

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process {
withName : "FASTQC" {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName : "MERGED_LIB_BAM" {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName : "MERGED_LIB_PICARD_METRICS" {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName : "MERGED_REP_BAM" {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
}