mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-22 10:38:16 +00:00
44 lines
979 B
Text
44 lines
979 B
Text
// Profile config names for nf-core/configs
|
|
|
|
params {
|
|
// Specific nf-core/configs params
|
|
config_profile_contact = 'Maxime Garcia (@maxulysse)'
|
|
config_profile_description = 'MUNIN profile provided by nf-core/configs'
|
|
config_profile_url = 'https://ki.se/forskning/barntumorbanken'
|
|
|
|
// Local AWS iGenomes reference file paths on munin
|
|
igenomes_base = '/data1/references/igenomes/'
|
|
|
|
// General cpus/memory/time requirements
|
|
max_cpus = 46
|
|
max_memory = 752.GB
|
|
max_time = 72.h
|
|
}
|
|
|
|
process {
|
|
executor = 'local'
|
|
maxForks = 46
|
|
|
|
// Limit cpus for Mutect2
|
|
withName:'Mutect2|Mutect2Single|PileupSummariesForMutect2' {
|
|
time = {48.h * task.attempt}
|
|
maxForks = 12
|
|
}
|
|
}
|
|
|
|
singularity {
|
|
cacheDir = '/data1/containers/'
|
|
enabled = true
|
|
runOptions = "--bind /media/BTB_2021_01"
|
|
}
|
|
|
|
// To use docker, use nextflow run -profile munin,docker
|
|
profiles {
|
|
docker {
|
|
docker {
|
|
enabled = false
|
|
mountFlags = 'z'
|
|
fixOwnership = true
|
|
}
|
|
}
|
|
}
|