mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-22 10:38:16 +00:00
31 lines
867 B
Text
31 lines
867 B
Text
//Profile config names for nf-core/configs
|
|
params
|
|
{
|
|
config_profile_description = 'Northwestern University Quest HPC (Genomics Nodes) config provided by nf-core/configs'
|
|
config_profile_contact = 'Rogan Grant / Janna Nugent (@RoganGrant, @NUjon)'
|
|
config_profile_url = 'https://www.it.northwestern.edu/research/user-services/quest/'
|
|
max_memory = 190.GB
|
|
max_cpus = 40
|
|
max_time = 240.h
|
|
igenomes_base = "/projects/genomicsshare/AWS_iGenomes/references"
|
|
}
|
|
|
|
singularity
|
|
{
|
|
enabled = true
|
|
autoMounts = true
|
|
cacheDir = "/projects/b1042/singularity_cache"
|
|
}
|
|
|
|
process
|
|
{
|
|
beforeScript = 'module purge; module load singularity/latest; module load graphviz/2.40.1'
|
|
executor = 'slurm'
|
|
queue = {task.memory >= 190.GB ? 'genomics-himem' : task.time >= 48.h ? 'genomicslong' : 'genomics'}
|
|
clusterOptions = '-A b1042'
|
|
}
|
|
|
|
executor
|
|
{
|
|
submitRateLimit = '1sec'
|
|
}
|