mirror of
https://github.com/MillironX/nf-configs.git
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55 lines
1.2 KiB
Text
55 lines
1.2 KiB
Text
// Profile config names for nf-core/configs
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params {
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config_profile_description = 'Swedish UPPMAX cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Phil Ewels (@ewels)'
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config_profile_url = 'https://www.uppmax.uu.se/'
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project = null
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clusterOptions = null
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schema_ignore_params = "genomes,input_paths,cluster-options,clusterOptions,project"
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}
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singularity {
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enabled = true
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}
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process {
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executor = 'slurm'
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clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
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}
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params {
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save_reference = true
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max_memory = 125.GB
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max_cpus = 16
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max_time = 240.h
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// illumina iGenomes reference file paths on UPPMAX
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igenomes_base = '/sw/data/uppnex/igenomes/'
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}
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def hostname = "hostname".execute().text.trim()
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if (hostname ==~ "b.*" || hostname ==~ "s.*") {
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params.max_memory = 109.GB
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}
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if (hostname ==~ "i.*") {
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params.max_memory = 250.GB
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}
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if (hostname ==~ "r.*") {
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params.max_cpus = 20
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}
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profiles {
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devel {
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params {
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config_profile_description = 'Testing & development profile for UPPMAX, provided by nf-core/configs.'
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// Max resources to be requested by a devel job
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max_memory = 120.GB
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max_time = 1.h
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}
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executor.queueSize = 1
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process.queue = 'devel'
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}
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}
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