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51 lines
1.4 KiB
Text
51 lines
1.4 KiB
Text
//Profile config names for nf-core/configs
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params {
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config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs'
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config_profile_contact = 'Edmund Miller(@emiller88)'
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config_profile_url = 'http://docs.oithpc.utdallas.edu/'
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}
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env {
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TMPDIR = '/home/$USER/scratch/tmp'
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SINGULARITY_CACHEDIR = '/home/$USER/scratch/tmp'
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}
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singularity {
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enabled = true
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envWhitelist='SINGULARITY_BINDPATH'
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autoMounts = true
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}
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process {
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beforeScript = 'module load singularity/3.2.1'
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executor = 'slurm'
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queue = { task.memory >= 32.GB && task.cpu <= 12 ? 'Kim': task.memory <= 24.GB && task.cpu <= 8 ? 'smallmem' : 'genomics' }
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withName:TRIMGALORE {
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memory = 31.GB
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}
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withLabel:process_low {
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cpus = { check_max( 2 * task.attempt, 'cpus' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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time = { check_max( 6.h * task.attempt, 'time' ) }
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}
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withLabel:process_medium {
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cpus = { check_max( 16 * task.attempt, 'cpus' ) }
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memory = { check_max( 31.GB * task.attempt, 'memory' ) }
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time = { check_max( 8.h * task.attempt, 'time' ) }
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}
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withLabel:process_high {
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cpus = { check_max( 12 * task.attempt, 'cpus' ) }
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memory = { check_max( 120.GB * task.attempt, 'memory' ) }
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time = { check_max( 16.h * task.attempt, 'time' ) }
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}
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}
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params {
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max_memory = 128.GB
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max_cpus = 16
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max_time = 96.h
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}
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