mirror of
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57 lines
3.3 KiB
Text
57 lines
3.3 KiB
Text
/*
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* -------------------------------------------------
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* nfcore custom profile Nextflow config file
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* -------------------------------------------------
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* Config options for all custom environments.
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* Cluster-specific config options should be saved
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* in the conf folder and imported under a profile
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* name here.
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*/
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params.custom_config_version = 'master'
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params.custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
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//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
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profiles {
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awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
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bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
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binac { includeConfig "${params.custom_config_base}/conf/binac.config" }
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cbe { includeConfig "${params.custom_config_base}/conf/cbe.config" }
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ccga { includeConfig "${params.custom_config_base}/conf/ccga.config" }
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ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
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cfc { includeConfig "${params.custom_config_base}/conf/cfc.config" }
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crick { includeConfig "${params.custom_config_base}/conf/crick.config" }
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czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
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czbiohub_aws_highpriority {
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includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config";
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includeConfig "${params.custom_config_base}/conf/czbiohub_aws_highpriority.config"}
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genotoul { includeConfig "${params.custom_config_base}/conf/genotoul.config" }
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denbi_qbic { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" }
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genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" }
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gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
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hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
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kraken { includeConfig "${params.custom_config_base}/conf/kraken.config" }
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munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
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pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
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phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
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prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
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shh { includeConfig "${params.custom_config_base}/conf/shh.config" }
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uct_hex { includeConfig "${params.custom_config_base}/conf/uct_hex.config" }
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uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
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uppmax_devel { includeConfig "${params.custom_config_base}/conf/uppmax.config";
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includeConfig "${params.custom_config_base}/conf/uppmax_devel.config" }
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uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
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}
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// If user hostnames contain one of these substring and they are
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// not running the associated profile, it will trigger a warning message
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// Should be defined here for all profiles (not within profile config)
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params {
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// This is a groovy map, not a nextflow parameter set
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hostnames = [
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crick: ['.thecrick.org'],
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genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'],
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genouest: ['.genouest.org'],
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uppmax: ['.uppmax.uu.se']
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]
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}
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