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44 lines
948 B
Text
44 lines
948 B
Text
//Profile config names for nf-core/configs
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params {
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// Config Params
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config_profile_description = 'Imperial College London - MEDBIO QUEUE - HPC Profile -- provided by nf-core/configs.'
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config_profile_contact = 'NA'
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config_profile_url = 'https://www.imperial.ac.uk/bioinformatics-data-science-group/resources/uk-med-bio/'
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// Resources
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max_memory = 640.GB
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max_cpus = 32
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max_time = 168.h
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}
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executor {
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$pbspro {
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queueSize = 50
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}
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$local {
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cpus = 2
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queueSize = 1
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memory = '32 GB'
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}
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}
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singularity {
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enabled = true
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autoMounts = true
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runOptions = "-B /rds/,/rdsgpfs/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp"
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}
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process {
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executor = 'pbspro'
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queue = 'pqmedbio-tput'
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//queue = 'med-bio' //!! this is an alias and shouldn't be used
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//withLabel:process_large {
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//queue = 'pqmedbio-large' //!! this queue is unavailable as of Feb 2022
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//}
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}
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