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nf-configs/conf/pipeline/sarek/munin.config
2019-12-12 11:50:10 +01:00

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// Profile config names for nf-core/configs
params {
// Specific nf-core/configs params
config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs'
// Specific nf-core/sarek params
annotation_cache = true
pon = '/data1/PON/vcfs/BTB.PON.vcf.gz'
pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi'
snpEff_cache = '/data1/cache/snpEff/'
vep_cache = '/data1/cache/VEP/'
}
// Specific nf-core/sarek process configuration
process {
withLabel:sentieon {
module = {params.sentieon ? 'sentieon/201808.05' : null}
container = {params.sentieon ? null : container}
}
}