mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-10 20:13:09 +00:00
cc380ce9a1
Added polling frequencies to the config as requested by MPCDF admin. Also updated the number of (real) cores on Raven.
73 lines
1.8 KiB
Text
73 lines
1.8 KiB
Text
params {
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config_profile_description = 'MPCDF HPC profiles (unoffically) provided by nf-core/configs.'
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config_profile_contact = 'James Fellows Yates (@jfy133)'
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config_profile_url = 'https://www.mpcdf.mpg.de/services/supercomputing'
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}
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profiles {
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cobra {
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cleanup = true
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process {
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beforeScript = 'module load singularity'
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executor = 'slurm'
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}
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executor {
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queueSize = 8
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pollInterval = '1 min'
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queueStatInterval = '5 min'
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}
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// Set $NXF_SINGULARITY_CACHEDIR in your ~/.bash_profile
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// to stop downloading the same image for every run
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singularity {
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enabled = true
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autoMounts = true
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}
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params {
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config_profile_description = 'MPCDF cobra profile (unofficially) provided by nf-core/configs.'
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max_memory = 725.GB
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max_cpus = 80
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max_time = 24.h
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}
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}
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raven {
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cleanup = true
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process {
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beforeScript = 'module load singularity'
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executor = 'slurm'
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}
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executor {
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queueSize = 8
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pollInterval = '1 min'
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queueStatInterval = '5 min'
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}
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// Set $NXF_SINGULARITY_CACHEDIR in your ~/.bash_profile
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// to stop downloading the same image for every run
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singularity {
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enabled = true
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autoMounts = true
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}
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params {
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config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.'
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max_memory = 368.GB
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max_cpus = 72
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max_time = 24.h
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}
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}
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debug {
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cleanup = false
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}
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}
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