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33 lines
924 B
Text
33 lines
924 B
Text
// Define the Scratch directory
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def scratch_dir = System.getenv("USER_SCRATCH") ?: "/tmp"
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params {
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config_profile_name = 'cheaha'
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config_profile_description = 'University of Alabama at Birmingham Cheaha HPC'
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config_profile_contact = 'Lara Ianov (lianov@uab.edu) or Austyn Trull (atrull@uab.edu)'
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config_profile_url = 'https://www.uab.edu/cores/ircp/bds'
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}
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env {
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TMPDIR="$scratch_dir"
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SINGULARITY_TMPDIR="$scratch_dir"
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}
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singularity {
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enabled = true
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autoMounts = true
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runOptions = "--contain --workdir $scratch_dir"
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}
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process {
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executor = 'slurm'
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queue = { task.memory <= 50.GB ? (task.time <= 2.h ? 'express' : task.time <= 12.h ? 'short' : task.time <= 50.h ? 'medium' : 'long') : (task.time <= 50.h ? 'largemem' : 'largemem-long')}
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maxRetries = 3
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beforeScript = 'module load Singularity'
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}
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params {
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max_memory = 750.GB
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max_cpus = 128
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max_time = 150.h
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}
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