mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-25 17:29:55 +00:00
32 lines
873 B
Text
32 lines
873 B
Text
//Profile config names for nf-core/configs
|
|
|
|
params {
|
|
config_profile_description = 'National University of Ireland, Galway Lugh cluster profile provided by nf-core/configs'
|
|
config_profile_contact = 'Barry Digby (@BarryDigby)'
|
|
config_profile_url = 'https://github.com/nf-core/configs/blob/master/docs/lugh.md'
|
|
}
|
|
|
|
singularity {
|
|
enabled = true
|
|
autoMounts = true
|
|
cacheDir = '/data/containers'
|
|
}
|
|
|
|
process {
|
|
beforeScript = """
|
|
module load EasyBuild/3.4.1
|
|
module load Java/1.8.0_144
|
|
module load singularity/3.4.1
|
|
ulimit -s unlimited
|
|
"""
|
|
.stripIndent()
|
|
containerOptions = '-B /data/'
|
|
executor = 'slurm'
|
|
queue = { task.memory >= 64.GB || task.cpus > 16 ? 'highmem' : 'normal' }
|
|
}
|
|
|
|
params {
|
|
max_time = 120.h
|
|
max_memory = 128.GB
|
|
max_cpus = 32
|
|
}
|