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https://github.com/MillironX/nf-configs.git
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9747d5fe15
Add PileupSummariesForMutect2 to the list to run with less threads. Changed the MaxForks to 12 Tested on an internal sample and it worked!
45 lines
989 B
Text
45 lines
989 B
Text
// Profile config names for nf-core/configs
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params {
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// Specific nf-core/configs params
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config_profile_contact = 'Maxime Garcia (@maxulysse)'
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config_profile_description = 'MUNIN profile provided by nf-core/configs'
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config_profile_url = 'https://ki.se/forskning/barntumorbanken'
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// Local AWS iGenomes reference file paths on munin
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igenomes_base = '/data1/references/igenomes/'
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// General cpus/memory/time requirements
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max_cpus = 46
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max_memory = 752.GB
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max_time = 72.h
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}
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process {
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executor = 'local'
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maxForks = 46
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// Limit cpus for Mutect2
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process {
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withName:'Mutect2|Mutect2Single|PileupSummariesForMutect2' {
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time = {48.h * task.attempt}
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maxForks = 12
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}
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}
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singularity {
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cacheDir = '/data1/containers/'
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enabled = true
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runOptions = "--bind /media/BTB_2021_01"
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}
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// To use docker, use nextflow run -profile munin,docker
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profiles {
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docker {
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docker {
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enabled = false
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mountFlags = 'z'
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fixOwnership = true
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}
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}
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}
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