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84 lines
5.3 KiB
Text
84 lines
5.3 KiB
Text
/*
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* -------------------------------------------------
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* nfcore custom profile Nextflow config file
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* -------------------------------------------------
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* Config options for all custom environments.
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* Cluster-specific config options should be saved
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* in the conf folder and imported under a profile
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* name here.
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*/
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//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
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profiles {
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abims { includeConfig "${params.custom_config_base}/conf/abims.config" }
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alice { includeConfig "${params.custom_config_base}/conf/alice.config" }
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aws_tower { includeConfig "${params.custom_config_base}/conf/aws_tower.config" }
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awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
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bi { includeConfig "${params.custom_config_base}/conf/bi.config" }
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bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
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binac { includeConfig "${params.custom_config_base}/conf/binac.config" }
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biohpc_gen { includeConfig "${params.custom_config_base}/conf/biohpc_gen.config" }
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cambridge { includeConfig "${params.custom_config_base}/conf/cambridge.config" }
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leicester { includeConfig "${params.custom_config_base}/conf/leicester.config" }
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cbe { includeConfig "${params.custom_config_base}/conf/cbe.config" }
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ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
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ccga_med { includeConfig "${params.custom_config_base}/conf/ccga_med.config" }
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cfc { includeConfig "${params.custom_config_base}/conf/cfc.config" }
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cfc_dev { includeConfig "${params.custom_config_base}/conf/cfc_dev.config" }
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computerome { includeConfig "${params.custom_config_base}/conf/computerome.config" }
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crick { includeConfig "${params.custom_config_base}/conf/crick.config" }
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czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
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denbi_qbic { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" }
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ebc { includeConfig "${params.custom_config_base}/conf/ebc.config" }
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eddie { includeConfig "${params.custom_config_base}/conf/eddie.config" }
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eva { includeConfig "${params.custom_config_base}/conf/eva.config" }
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genotoul { includeConfig "${params.custom_config_base}/conf/genotoul.config" }
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genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" }
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gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
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google { includeConfig "${params.custom_config_base}/conf/google.config" }
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hasta { includeConfig "${params.custom_config_base}/conf/hasta.config" }
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hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
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icr_davros { includeConfig "${params.custom_config_base}/conf/icr_davros.config" }
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ifb_core { includeConfig "${params.custom_config_base}/conf/ifb_core.config" }
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imperial { includeConfig "${params.custom_config_base}/conf/imperial.config" }
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imperial_mb { includeConfig "${params.custom_config_base}/conf/imperial_mb.config" }
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jax { includeConfig "${params.custom_config_base}/conf/jax.config" }
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lugh { includeConfig "${params.custom_config_base}/conf/lugh.config" }
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maestro { includeConfig "${params.custom_config_base}/conf/maestro.config" }
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mpcdf { includeConfig "${params.custom_config_base}/conf/mpcdf.config" }
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munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
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nu_genomics { includeConfig "${params.custom_config_base}/conf/nu_genomics.config" }
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oist { includeConfig "${params.custom_config_base}/conf/oist.config" }
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pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
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phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
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prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
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rosalind { includeConfig "${params.custom_config_base}/conf/rosalind.config" }
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sanger { includeConfig "${params.custom_config_base}/conf/sanger.config"}
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seg_globe { includeConfig "${params.custom_config_base}/conf/seg_globe.config"}
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uct_hpc { includeConfig "${params.custom_config_base}/conf/uct_hpc.config" }
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uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
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utd_ganymede { includeConfig "${params.custom_config_base}/conf/utd_ganymede.config" }
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utd_sysbio { includeConfig "${params.custom_config_base}/conf/utd_sysbio.config" }
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uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
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}
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// If user hostnames contain one of these substring and they are
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// not running the associated profile, it will trigger a warning message
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// Should be defined here for all profiles (not within profile config)
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params {
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// This is a groovy map, not a nextflow parameter set
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hostnames = [
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binac: ['.binac.uni-tuebingen.de'],
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cbe: ['.cbe.vbc.ac.at'],
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cfc: ['.hpc.uni-tuebingen.de'],
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crick: ['.thecrick.org'],
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genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'],
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genouest: ['.genouest.org'],
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icr_davros: ['.davros.compute.estate'],
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imperial: ['.hpc.ic.ac.uk'],
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imperial_mb: ['.hpc.ic.ac.uk'],
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uppmax: ['.uppmax.uu.se'],
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utd_ganymede: ['ganymede.utdallas.edu'],
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utd_sysbio: ['sysbio.utdallas.edu']
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]
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}
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