mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-25 17:29:55 +00:00
33 lines
747 B
Text
33 lines
747 B
Text
// Profile details
|
|
params {
|
|
config_profile_description = 'The Wellcome Sanger Institute HPC cluster (farm5) profile'
|
|
config_profile_contact = 'Priyanka Surana (@priyanka-surana)'
|
|
config_profile_url = 'https://www.sanger.ac.uk'
|
|
}
|
|
|
|
// Queue and retry strategy
|
|
process{
|
|
executor = 'lsf'
|
|
queue = { task.time < 12.h ? 'normal' : task.time < 48.h ? 'long' : 'basement' }
|
|
errorStrategy = 'retry'
|
|
maxRetries = 5
|
|
}
|
|
|
|
// Executor details
|
|
executor{
|
|
name = 'lsf'
|
|
perJobMemLimit = true
|
|
poolSize = 4
|
|
submitRateLimit = '5 sec'
|
|
killBatchSize = 50
|
|
}
|
|
|
|
// Max resources
|
|
params {
|
|
max_memory = 683.GB
|
|
max_cpus = 256
|
|
max_time = 720.h
|
|
}
|
|
|
|
// For singularity
|
|
singularity.runOptions = '--bind /lustre --bind /nfs'
|