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33 lines
825 B
Text
33 lines
825 B
Text
// sarek/uppmax specific profile config
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params {
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config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
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config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs'
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single_cpu_mem = 7000.MB
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// Just useful until iGenomes is updated on UPPMAX
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igenomes_ignore = true
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genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'
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}
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def hostname = "hostname".execute().text.trim()
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if (hostname ==~ "r.*") {
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params.single_cpu_mem = 6400.MB
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process {
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withName:BamQC {
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cpus = {params.max_cpus}
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memory = {params.max_memory}
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}
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}
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}
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if (hostname ==~ "i.*") {
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params.single_cpu_mem = 15.GB
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}
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// Miarka-specific config
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if (hostname ==~ "m.*") {
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params.single_cpu_mem = 7.GB
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}
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