millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-23 16:49:55 +00:00
Code Issues Releases Packages Activity
nf-configs/docs/pipeline/taxprofiler/eva.md
James Fellows Yates e1f780d976 Add taxprofiler for eVA
2022-05-12 07:54:17 +01:00

765 B
Raw Blame History

nf-core/configs: eva taxprofiler specific configuration

Extra specific configuration for taxprofiler pipeline

Usage

To use, run the pipeline with -profile eva.

This will download and launch the taxprofiler specific eva.config which has been pre-configured with a setup suitable for the MPI-EVA cluster.

Example: nextflow run nf-core/taxprofiler -profile eva

taxprofiler specific configurations for eva

Specific configurations for eva has been made for taxprofiler.

General profiles

  • The general MPI-EVA profile runs with default nf-core/taxprofiler parameters, but with modifications to account for issues SGE have with Java and python tools, nameling: BBDUK, MALT, MetaPhlAn3, and MEGAN