mirror of
https://github.com/MillironX/nf-configs.git
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51 lines
1.6 KiB
Text
51 lines
1.6 KiB
Text
process {
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withName:MapReads {
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cpus = 16
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}
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withName:BuildDict {
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cpus = 1
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:BamQC {
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cpus = 8
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memory = 128.GB
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clusterOptions = {"-l h_vmem=${(task.memory + 8.GB).bytes/task.cpus}"}
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}
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withName:MarkDuplicates {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:BaseRecalibrator {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:ApplyBQSR {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GatherBQSRReports {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:HaplotypeCaller {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GenotypeGVCFs {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:Mutect2 {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:MergeMutect2Stats {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:PileupSummariesForMutect2 {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:MergePileupSummaries {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:CalculateContamination {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:FilterMutect2Calls {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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}
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