mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-25 17:29:55 +00:00
60ae267e43
this seems to be more reliable for queue checking than using the clusterOptions directive. See https://github.com/nextflow-io/nextflow/issues/807
27 lines
784 B
Text
Executable file
27 lines
784 B
Text
Executable file
//Profile config names for nf-core/configs
|
|
params {
|
|
config_profile_description = 'BioHPC Genomics (biohpc_gen) cluster profile provided by nf-core/configs'
|
|
config_profile_contact = 'Patrick Hüther (@phue)'
|
|
config_profile_url = 'https://collab.lmu.de/display/BioHPCGenomics/BioHPC+Genomics'
|
|
}
|
|
|
|
env {
|
|
SLURM_CLUSTERS='biohpc_gen'
|
|
}
|
|
|
|
process {
|
|
executor = 'slurm'
|
|
queue = { task.memory <= 1536.GB ? (task.time > 2.d || task.memory > 384.GB ? 'biohpc_gen_production' : 'biohpc_gen_normal') : 'biohpc_gen_highmem' }
|
|
beforeScript = 'module use /dss/dssfs01/pr53da/pr53da-dss-0000/spack/modules/x86_avx2/linux*'
|
|
module = 'charliecloud/0.22:miniconda3'
|
|
}
|
|
|
|
charliecloud {
|
|
enabled = true
|
|
}
|
|
|
|
params {
|
|
params.max_time = 14.d
|
|
params.max_cpus = 80
|
|
params.max_memory = 3.TB
|
|
}
|