mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-29 02:49:55 +00:00
25 lines
770 B
Text
25 lines
770 B
Text
params {
|
|
config_profile_description = 'The Jackson Laboratory Sumner HPC profile provided by nf-core/configs.'
|
|
config_profile_contact = 'Asaf Peer (@peera)'
|
|
config_profile_url = 'https://jacksonlaboratory.sharepoint.com/sites/ResearchIT/SitePages/Welcome-to-Sumner.aspx'
|
|
singularity_cache_dir = '/fastscratch/singularity_cache_nfcore'
|
|
}
|
|
|
|
executor.$slurm.queueSize = 250
|
|
process {
|
|
executor = "slurm"
|
|
queue = "compute"
|
|
clusterOptions = {task.time < 72.h ? '-q batch' : '-q long'}
|
|
module = "slurm"
|
|
beforeScript = 'module load singularity'
|
|
}
|
|
singularity{
|
|
enabled = true
|
|
autoMounts = true
|
|
cacheDir = params.singularity_cache_dir
|
|
}
|
|
params {
|
|
max_memory = 768.GB
|
|
max_cpus = 70
|
|
max_time = 336.h
|
|
}
|