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78 lines
2.8 KiB
Plaintext
78 lines
2.8 KiB
Plaintext
process {
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withName:APPLYBQSR {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:APPLYBQSR_SPARK {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_APPLYVQSR {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_BASERECALIBRATOR {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_BASERECALIBRATOR_SPARK {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_CALCULATECONTAMINATION {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_CNNSCOREVARIANTS {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_CREATESEQUENCEDICTIONARY {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_ESTIMATELIBRARYCOMPLEXITY {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_FILTERMUTECTCALLS {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_FILTERVARIANTTRANCHES {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_GATHERBQSRREPORTS {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_GATHERPILEUPSUMMARIES {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_GENOMICSDBIMPORT {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_GENOTYPEGVCFS {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_GETPILEUPSUMMARIES {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_HAPLOTYPECALLER {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_INTERVALLISTTOBED {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_LEARNREADORIENTATIONMODEL {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_MARKDUPLICATES {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_MARKDUPLICATES_SPARK {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_MERGEMUTECTSTATS {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_MERGEVCFS {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_MUTECT2 {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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withName:GATK4_VARIANTRECALIBRATOR {
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clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
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}
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}
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