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e2c583d558
"/rdsgpfs" symlink will not be present on all nodes. Without that mount the container creation will fail.
37 lines
756 B
Text
37 lines
756 B
Text
//Profile config names for nf-core/configs
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params {
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// Config Params
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config_profile_description = 'Imperial College London - HPC Profile -- provided by nf-core/configs.'
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config_profile_contact = 'Combiz Khozoie (c.khozoie@imperial.ac.uk)'
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config_profile_url = 'https://www.imperial.ac.uk/admin-services/ict/self-service/research-support/rcs/'
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// Resources
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max_memory = 256.GB
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max_cpus = 32
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max_time = 72.h
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}
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executor {
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$pbspro {
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queueSize = 50
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}
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$local {
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cpus = 2
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queueSize = 1
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memory = '32 GB'
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}
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}
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singularity {
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enabled = true
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autoMounts = true
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runOptions = "-B /rds/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp"
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}
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process {
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executor = 'pbspro'
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}
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