mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-24 17:19:54 +00:00
78 lines
4.8 KiB
Text
78 lines
4.8 KiB
Text
/*
|
|
* -------------------------------------------------
|
|
* nfcore custom profile Nextflow config file
|
|
* -------------------------------------------------
|
|
* Config options for all custom environments.
|
|
* Cluster-specific config options should be saved
|
|
* in the conf folder and imported under a profile
|
|
* name here.
|
|
*/
|
|
|
|
//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
|
|
profiles {
|
|
abims { includeConfig "${params.custom_config_base}/conf/abims.config" }
|
|
aws_tower { includeConfig "${params.custom_config_base}/conf/aws_tower.config" }
|
|
awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
|
|
bi { includeConfig "${params.custom_config_base}/conf/bi.config" }
|
|
bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
|
|
binac { includeConfig "${params.custom_config_base}/conf/binac.config" }
|
|
biohpc_gen { includeConfig "${params.custom_config_base}/conf/biohpc_gen.config" }
|
|
cambridge { includeConfig "${params.custom_config_base}/conf/cambridge.config" }
|
|
cbe { includeConfig "${params.custom_config_base}/conf/cbe.config" }
|
|
ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
|
|
ccga_med { includeConfig "${params.custom_config_base}/conf/ccga_med.config" }
|
|
cfc { includeConfig "${params.custom_config_base}/conf/cfc.config" }
|
|
cfc_dev { includeConfig "${params.custom_config_base}/conf/cfc_dev.config" }
|
|
crick { includeConfig "${params.custom_config_base}/conf/crick.config" }
|
|
czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
|
|
denbi_qbic { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" }
|
|
ebc { includeConfig "${params.custom_config_base}/conf/ebc.config" }
|
|
eddie { includeConfig "${params.custom_config_base}/conf/eddie.config" }
|
|
eva { includeConfig "${params.custom_config_base}/conf/eva.config" }
|
|
genotoul { includeConfig "${params.custom_config_base}/conf/genotoul.config" }
|
|
genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" }
|
|
gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
|
|
google { includeConfig "${params.custom_config_base}/conf/google.config" }
|
|
hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
|
|
icr_davros { includeConfig "${params.custom_config_base}/conf/icr_davros.config" }
|
|
ifb_core { includeConfig "${params.custom_config_base}/conf/ifb_core.config" }
|
|
imperial { includeConfig "${params.custom_config_base}/conf/imperial.config" }
|
|
imperial_mb { includeConfig "${params.custom_config_base}/conf/imperial_mb.config" }
|
|
jax { includeConfig "${params.custom_config_base}/conf/jax.config" }
|
|
lugh { includeConfig "${params.custom_config_base}/conf/lugh.config" }
|
|
mpcdf { includeConfig "${params.custom_config_base}/conf/mpcdf.config" }
|
|
munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
|
|
nu_genomics { includeConfig "${params.custom_config_base}/conf/nu_genomics.config" }
|
|
oist { includeConfig "${params.custom_config_base}/conf/oist.config" }
|
|
pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
|
|
phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
|
|
prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
|
|
sanger { includeConfig "${params.custom_config_base}/conf/sanger.config"}
|
|
seg_globe { includeConfig "${params.custom_config_base}/conf/seg_globe.config"}
|
|
uct_hpc { includeConfig "${params.custom_config_base}/conf/uct_hpc.config" }
|
|
uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
|
|
utd_ganymede { includeConfig "${params.custom_config_base}/conf/utd_ganymede.config" }
|
|
utd_sysbio { includeConfig "${params.custom_config_base}/conf/utd_sysbio.config" }
|
|
uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
|
|
}
|
|
|
|
// If user hostnames contain one of these substring and they are
|
|
// not running the associated profile, it will trigger a warning message
|
|
// Should be defined here for all profiles (not within profile config)
|
|
params {
|
|
// This is a groovy map, not a nextflow parameter set
|
|
hostnames = [
|
|
binac: ['.binac.uni-tuebingen.de'],
|
|
cbe: ['.cbe.vbc.ac.at'],
|
|
cfc: ['.hpc.uni-tuebingen.de'],
|
|
crick: ['.thecrick.org'],
|
|
genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'],
|
|
genouest: ['.genouest.org'],
|
|
icr_davros: ['.davros.compute.estate'],
|
|
imperial: ['.hpc.ic.ac.uk'],
|
|
imperial_mb: ['.hpc.ic.ac.uk'],
|
|
uppmax: ['.uppmax.uu.se'],
|
|
utd_ganymede: ['ganymede.utdallas.edu'],
|
|
utd_sysbio: ['sysbio.utdallas.edu']
|
|
]
|
|
}
|