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nf-configs/conf/uppmax.config

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//Profile config names for nf-core/configs
params {
config_profile_description = 'Swedish UPPMAX cluster profile provided by nf-core/configs.'
config_profile_contact = 'Phil Ewels (@ewels)'
config_profile_url = 'https://www.uppmax.uu.se/'
}
singularity {
enabled = true
}
process {
executor = 'slurm'
clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
}
params {
saveReference = true
max_memory = 128.GB
max_cpus = 16
max_time = 240.h
// illumina iGenomes reference file paths on UPPMAX
igenomes_base = '/sw/data/uppnex/igenomes/'
}