mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-25 17:29:55 +00:00
27 lines
1.1 KiB
Text
27 lines
1.1 KiB
Text
// Profile config names for nf-core/configs
|
|
System.err.println("reading from the extra uppmax config, e.g. Daniels")
|
|
params {
|
|
// Specific nf-core/configs params
|
|
config_profile_contact = 'Daniel Lundin (daniel.lundin@lnu.se)'
|
|
config_profile_description = 'nf-core/ampliseq UPPMAX profile provided by nf-core/configs'
|
|
}
|
|
|
|
process {
|
|
//"make_classifier" is the older version (just one step) of preparing the database for classification
|
|
withName: make_classifier {
|
|
clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" }
|
|
}
|
|
|
|
//"clfr_extract_seq" and "clfr_train" is the newer version, where database preparation is split in two to optimise resources
|
|
withName: clfr_extract_seq {
|
|
clusterOptions = { "-A $params.project -p core -n 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" }
|
|
}
|
|
|
|
withName: clfr_train {
|
|
clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 24:00:00 ${params.clusterOptions ?: ''}" }
|
|
}
|
|
|
|
withName: classifier {
|
|
clusterOptions = { "-A $params.project -C fat -p node -N 1 ${params.clusterOptions ?: ''}" }
|
|
}
|
|
}
|