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nf-configs/conf/biohpc_gen.config
phue b20f28a3c9 biohpc_gen: load charliecloud from lrz software tree and remove conda fallback
the biohpc_gen specific software tree is less maintained and outdated
2022-09-05 11:25:33 +02:00

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//Profile config names for nf-core/configs
params {
config_profile_description = 'BioHPC Genomics (biohpc_gen) cluster profile provided by nf-core/configs'
config_profile_contact = 'Patrick Hüther (@phue)'
config_profile_url = 'https://collab.lmu.de/display/BioHPCGenomics/BioHPC+Genomics'
}
env {
SLURM_CLUSTERS='biohpc_gen'
}
process {
executor = 'slurm'
queue = { task.memory <= 1536.GB ? (task.time > 2.d || task.memory > 384.GB ? 'biohpc_gen_production' : 'biohpc_gen_normal') : 'biohpc_gen_highmem' }
module = 'charliecloud/0.25'
}
charliecloud {
enabled = true
}
params {
params.max_time = 14.d
params.max_cpus = 80
params.max_memory = 3.TB
}