mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-24 09:09:56 +00:00
46 lines
1.3 KiB
Text
46 lines
1.3 KiB
Text
//Profile config names for nf-core/configs
|
|
params {
|
|
config_profile_description = 'Cluster profile for medair (local cluster of Clinical Genomics Gothenburg)'
|
|
config_profile_contact = 'Clinical Genomics, Gothenburg (cgg-rd@gu.se, cgg-it@gu.se)'
|
|
config_profile_url = 'https://www.scilifelab.se/units/clinical-genomics-goteborg/'
|
|
}
|
|
|
|
//Nextflow parameters
|
|
singularity {
|
|
enabled = true
|
|
cacheDir = "/apps/bio/dependencies/nf-core/singularities"
|
|
}
|
|
|
|
profiles {
|
|
|
|
wgs {
|
|
process {
|
|
queue = 'wgs.q'
|
|
executor = 'sge'
|
|
penv = 'mpi'
|
|
process.clusterOptions = '-l excl=1'
|
|
params.max_cpus = 40
|
|
params.max_time = 48.h
|
|
params.max_memory = 128.GB
|
|
}
|
|
}
|
|
|
|
production {
|
|
process {
|
|
queue = 'production.q'
|
|
executor = 'sge'
|
|
penv = 'mpi'
|
|
process.clusterOptions = '-l excl=1'
|
|
params.max_cpus = 40
|
|
params.max_time = 480.h
|
|
params.max_memory = 128.GB
|
|
}
|
|
}
|
|
}
|
|
|
|
//Specific parameter for pipelines that can use Sentieon (e.g. nf-core/sarek, nf-core/raredisease)
|
|
process {
|
|
withLabel:'sentieon' {
|
|
container = "/apps/bio/singularities/sentieon-211204-peta.simg"
|
|
}
|
|
}
|