mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-23 10:58:16 +00:00
28 lines
1 KiB
Text
28 lines
1 KiB
Text
// sarek/munin specific profile config
|
|
|
|
params {
|
|
// Specific nf-core/configs params
|
|
config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
|
|
config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs'
|
|
|
|
// Specific nf-core/sarek params
|
|
annotation_cache = true
|
|
cadd_cache = true
|
|
cadd_indels = '/data1/cache/CADD/v1.4/InDels.tsv.gz'
|
|
cadd_indels_tbi = '/data1/cache/CADD/v1.4/InDels.tsv.gz.tbi'
|
|
cadd_wg_snvs = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz'
|
|
cadd_wg_snvs_tbi = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz.tbi'
|
|
pon = '/data1/PON/vcfs/BTB.PON.vcf.gz'
|
|
pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi'
|
|
snpeff_cache = '/data1/cache/snpEff/'
|
|
vep_cache = '/data1/cache/VEP/'
|
|
vep_cache_version = '95'
|
|
}
|
|
|
|
// Specific nf-core/sarek process configuration
|
|
process {
|
|
withLabel:sentieon {
|
|
module = {params.sentieon ? 'sentieon/201911.00' : null}
|
|
container = {params.sentieon ? null : container}
|
|
}
|
|
}
|