You cannot select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
29 lines
796 B
Plaintext
29 lines
796 B
Plaintext
/*
|
|
* -------------------------------------------------
|
|
* Nextflow config file for UPPMAX (rackham / irma)
|
|
* -------------------------------------------------
|
|
* Defines reference genomes, using iGenome paths
|
|
* Imported under the default 'standard' Nextflow
|
|
* profile in nextflow.config
|
|
*/
|
|
|
|
singularity {
|
|
enabled = true
|
|
}
|
|
|
|
process {
|
|
executor = 'slurm'
|
|
clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
|
|
}
|
|
|
|
params {
|
|
saveReference = true
|
|
// Max resources requested by a normal node on milou. If you need more memory, run on a fat node using:
|
|
// --clusterOptions "-C mem512GB" --max_memory "512GB"
|
|
max_memory = 128.GB
|
|
max_cpus = 16
|
|
max_time = 240.h
|
|
// illumina iGenomes reference file paths on UPPMAX
|
|
igenomes_base = '/sw/data/uppnex/igenomes/'
|
|
}
|