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59 lines
911 B
Text
59 lines
911 B
Text
// Sheffield Bioinformatics Core Configuration Profile - ShARC
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// Base Institutional Configuration
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// nf-core specific parameters displayed in header summary of each run
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params {
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config_profile_description = 'Sheffield Bioinformatics Core - ShARC'
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config_profile_contact = 'Lewis Quayle (l.quayle@sheffield.ac.uk)'
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config_profile_url = 'https://docs.hpc.shef.ac.uk/en/latest/sharc/index.html'
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}
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// hpc resource limits
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params {
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max_cpus = 16
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max_memory = 256.GB
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max_time = 96.h
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}
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// hpc configuration specific to ShARC
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process {
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// scheduler
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executor = 'sge'
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penv = 'smp'
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queue = { task.time <= 6.h ? 'shortint.q' : 'all.q' }
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clusterOptions = { "-l rmem=${ (task.memory.toGiga() / task.cpus) }G" }
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}
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// optional executor settings
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executor {
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queueSize = 10
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submitRateLimit = '1 sec'
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}
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// container engine
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singularity {
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enabled = true
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autoMounts = true
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}
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