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nf-configs/conf/uct_hex.config

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//Profile config names for nf-core/configs
params {
config_profile_description = 'University of Cape Town HEX cluster config file provided by nf-core/configs.'
config_profile_contact = 'Katie Lennard (@kviljoen)'
config_profile_url = 'http://hpc.uct.ac.za/index.php/hex-3/'
}
singularity {
enabled = true
cacheDir = "/scratch/DB/bio/singularity-containers"
}
process {
stageInMode = 'symlink'
stageOutMode = 'rsync'
queue = 'UCTlong'
clusterOptions = { "-M $params.email -m abe -l nodes=1:ppn=1:series600" }
}
executor{
executor = 'pbs'
jobName = { "$task.tag" }
}