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40 lines
900 B
Text
40 lines
900 B
Text
/*
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* --------------------------------------------------------------
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* nf-core pipelines config file for AD project using CRA HPC
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* --------------------------------------------------------------
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*/
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params {
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config_profile_name = 'adcra'
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config_profile_description = 'CRA HPC profile provided by nf-core/configs'
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config_profile_contact = 'Kalayanee Chairat (@kalayaneech)'
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config_profile_url = 'https://bioinformatics.kmutt.ac.th/'
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}
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params {
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max_cpus = 16
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max_memory = 128.GB
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max_time = 120.h
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}
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// Specify the job scheduler
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executor {
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name = 'slurm'
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queueSize = 20
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submitRateLimit = '6/1min'
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}
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singularity {
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enabled = true
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autoMounts = true
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}
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process {
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scratch = true
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queue = 'unlimit'
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queueStatInterval = '10 min'
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maxRetries = 3
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errorStrategy = { task.attempt <=3 ? 'retry' : 'finish' }
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cache = 'lenient'
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exitStatusReadTimeoutMillis = '2700000'
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}
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