mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-10 20:13:09 +00:00
28 lines
No EOL
892 B
YAML
28 lines
No EOL
892 B
YAML
sudo: required
|
|
language: python
|
|
jdk: openjdk8
|
|
services:
|
|
- docker
|
|
python:
|
|
- '3.6'
|
|
cache: pip
|
|
matrix:
|
|
fast_finish: true
|
|
|
|
before_install:
|
|
# PRs to master are only ok if coming from dev branch
|
|
- '[ $TRAVIS_PULL_REQUEST = "false" ] || [ $TRAVIS_BRANCH != "master" ] || ([ $TRAVIS_PULL_REQUEST_SLUG = $TRAVIS_REPO_SLUG ] && [ $TRAVIS_PULL_REQUEST_BRANCH = "dev" ])'
|
|
|
|
install:
|
|
# Install Nextflow
|
|
- mkdir /tmp/nextflow && cd /tmp/nextflow
|
|
- wget -qO- get.nextflow.io | bash
|
|
- sudo ln -s /tmp/nextflow/nextflow /usr/local/bin/nextflow
|
|
|
|
env:
|
|
- NXF_VER='18.10.1' # Specify a minimum NF version that should be tested and work
|
|
- NXF_VER='' # Plus: get the latest NF version and check, that it works
|
|
|
|
script:
|
|
# Run the pipeline with the test profile and test remote config
|
|
- nextflow run nf-core/hlatyping --custom_config_version ${TRAVIS_BRANCH} -profile test_configs,test,docker |