millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-23 08:49:54 +00:00
Code Issues Releases Packages Activity
nf-configs/docs/pipeline/sarek/uppmax.md
MaxUlysse 250035e71d fix path to config files
2020-03-11 14:11:23 +01:00

610 B
Raw Blame History

nf-core/configs: uppmax sarek specific configuration

Extra specific configuration for sarek pipeline

Usage

To use, run the pipeline with -profile uppmax.

This will download and launch the sarek specific uppmax.config which has been pre-configured with a setup suitable for uppmax clusters.

Example: nextflow run nf-core/sarek -profile uppmax

Sarek specific configurations for uppmax clusters

Specific configurations for uppmax clusters has been made for sarek.

  • Set paths to reference genomes
  • Set path to singularity containers for irma