- name: chromap chromap test_chromap_chromap_single_end
  command: nextflow run ./tests/modules/chromap/chromap -entry test_chromap_chromap_single_end -c ./tests/config/nextflow.config -c ./tests/modules/chromap/chromap/nextflow.config
  tags:
    - chromap/chromap
    - chromap
  files:
    - path: output/chromap/genome.index
    - path: output/chromap/test.bed.gz
      md5sum: 25e40bde24c7b447292cd68573728694

- name: chromap chromap test_chromap_chromap_paired_end
  command: nextflow run ./tests/modules/chromap/chromap -entry test_chromap_chromap_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/chromap/chromap/nextflow.config
  tags:
    - chromap/chromap
    - chromap
  files:
    - path: output/chromap/genome.index
    - path: output/chromap/test.bed.gz
      md5sum: 7cdc8448882b75811e0c784f5f20aef2

- name: chromap chromap test_chromap_chromap_paired_bam
  command: nextflow run ./tests/modules/chromap/chromap -entry test_chromap_chromap_paired_bam -c ./tests/config/nextflow.config -c ./tests/modules/chromap/chromap/nextflow.config
  tags:
    - chromap/chromap
    - chromap
  files:
    - path: output/chromap/genome.index
    - path: output/chromap/test.bam
      md5sum: 73e2c76007e3c61df625668e01b3f42f
