- name: dragmap align single-end
  command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_single_end -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config
  tags:
    - dragmap
    - dragmap/align
  files:
    - path: output/dragmap/test.bam
    - path: output/dragmap/test.dragmap.log

- name: dragmap align single-end_sort
  command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_single_end_sort -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config
  tags:
    - dragmap
    - dragmap/align
  files:
    - path: output/dragmap/test.bam
    - path: output/dragmap/test.dragmap.log

- name: dragmap align paired-end
  command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config
  tags:
    - dragmap
    - dragmap/align
  files:
    - path: output/dragmap/test.bam
    - path: output/dragmap/test.dragmap.log

- name: dragmap align paired-end_sort
  command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_paired_end_sort -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config
  tags:
    - dragmap
    - dragmap/align
  files:
    - path: output/dragmap/test.bam
    - path: output/dragmap/test.dragmap.log
