- name: ichorcna run test_ichorcna_run_no_panel
  command: nextflow run tests/modules/ichorcna/run -entry test_ichorcna_run_no_panel -c tests/config/nextflow.config
  tags:
    - ichorcna
    - ichorcna/run
  files:
    - path: output/ichorcna/test.cna.seg
      contains: ['Corrected_Copy_Number']
    - path: output/ichorcna/test.params.txt
      md5sum: e39a579cdcc9576679f06dc5c22605a7
    - path: output/ichorcna/versions.yml
      md5sum: effb37e19bec3609417aaccad4b6a294

- name: ichorcna run test_ichorcna_run_inc_panel
  command: nextflow run tests/modules/ichorcna/run -entry test_ichorcna_run_inc_panel -c tests/config/nextflow.config
  tags:
    - ichorcna
    - ichorcna/run
  files:
    - path: output/ichorcna/test.cna.seg
      contains: ['Corrected_Copy_Number']
    - path: output/ichorcna/test.params.txt
      md5sum: 0b97e0269cd0b571f5a85890f6ddb181
    - path: output/ichorcna/versions.yml
      md5sum: fc9d96de0a1c15cea59208305b14e535
