name: qcat
description: Demultiplexer for Nanopore samples
keywords:
  - demultiplex

tools:
  - qcat:
      description: |
        A demultiplexer for Nanopore samples
      homepage: https://github.com/nanoporetech/qcat
      documentation: https://github.com/nanoporetech/qcat#qcat
      licence: ["MPL-2.0"]
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - reads:
      type: file
      description: |
        Non-demultiplexed fastq files

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - reads:
      type: file
      description: Demultiplexed fastq samples
      pattern: "*.fastq.gz"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@yuukiiwa"
  - "@drpatelh"
