name: pangolin
description: Phylogenetic Assignment of Named Global Outbreak LINeages
keywords:
  - covid
  - pangolin
  - lineage
tools:
  - star:
      description: |
        Phylogenetic Assignment of Named Global Outbreak LINeages
      homepage: https://github.com/cov-lineages/pangolin#pangolearn-description
      manual: https://github.com/cov-lineages/pangolin#pangolearn-description
      licence: ["GPL-3.0-or-later"]
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
  - fasta:
      type: file
      description: |
        The genome assembly to be evaluated
output:
  - report:
      type: file
      description: Pangolin lineage report
      pattern: "*.{csv}"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@kevinmenden"
  - "@drpatelh"
