- name: freebayes test_freebayes
  command: nextflow run tests/modules/freebayes -entry test_freebayes -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: f28d0b8e2ccedeac0e590ca2ecaac83d
    - path: output/freebayes/versions.yml
      md5sum: 53651eb835af65df829241257584a7d2

- name: freebayes test_freebayes_bed
  command: nextflow run tests/modules/freebayes -entry test_freebayes_bed -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 1927441d1b7a4c48cbb61821de300ad4
    - path: output/freebayes/versions.yml
      md5sum: becc93c8a0be580c09d55b955d60a5e1

- name: freebayes test_freebayes_cram
  command: nextflow run tests/modules/freebayes -entry test_freebayes_cram -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 9b8d1d51d779bbea4086c7f7a2ece641
    - path: output/freebayes/versions.yml
      md5sum: 2e5b266edfc6cab81353cfc72c00f67c

- name: freebayes test_freebayes_somatic
  command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: dcaa639912174055c1380913d6102c01
    - path: output/freebayes/versions.yml
      md5sum: 8fbdb4c052fb3e42b5508a966125fa05

- name: freebayes test_freebayes_somatic_cram_intervals
  command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic_cram_intervals -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: b0052a2b83c0ba1b9686d0c96e61712f
    - path: output/freebayes/versions.yml
      md5sum: af97e3dfdc086188739907c3460e49e0
