- name: sistr test_sistr
  command: nextflow run tests/modules/sistr -entry test_sistr -c tests/config/nextflow.config
  tags:
    - sistr
  files:
    - path: output/sistr/test-allele.fasta
      md5sum: 144a74999eb9dd01520be5c61e8bd210
    - path: output/sistr/test-allele.json
      md5sum: 3eb993c9489904621f539a93ff9a90ec
    - path: output/sistr/test-cgmlst.csv
      md5sum: c50a2144955fe1b98a6d5792bf295088
    - path: output/sistr/test.tab
      contains: ["cgmlst_ST", "serovar", "matched"]
    - path: output/sistr/versions.yml
      md5sum: 8b852f002c3ce67e3f6498da15b28296
