name: bowtie_build
description: Create bowtie index for reference genome
keywords:
  - index
  - fasta
  - genome
  - reference
tools:
  - bowtie:
      description: |
        bowtie is a software package for mapping DNA sequences against
        a large reference genome, such as the human genome.
      homepage: http://bowtie-bio.sourceforge.net/index.shtml
      documentation: http://bowtie-bio.sourceforge.net/manual.shtml
      arxiv: arXiv:1303.3997
      licence: ["Artistic-2.0"]
input:
  - fasta:
      type: file
      description: Input genome fasta file
output:
  - index:
      type: file
      description: Bowtie genome index files
      pattern: "*.ebwt"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@kevinmenden"
  - "@drpatelh"
