- name: gatk4 applyvqsr test_gatk4_applyvqsr
  command: nextflow run tests/modules/gatk4/applyvqsr -entry test_gatk4_applyvqsr -c tests/config/nextflow.config -c ./tests/modules/gatk4/applyvqsr/nextflow.config
  tags:
    - gatk4/applyvqsr
    - gatk4
  files:
    - path: output/gatk4/test.vcf.gz
    - path: output/gatk4/test.vcf.gz.tbi
    - path: output/gatk4/versions.yml
      md5sum: ce9c443375683e7f2958fe958759ad29

- name: gatk4 applyvqsr test_gatk4_applyvqsr_allele_specific
  command: nextflow run tests/modules/gatk4/applyvqsr -entry test_gatk4_applyvqsr_allele_specific -c tests/config/nextflow.config -c ./tests/modules/gatk4/applyvqsr/nextflow.config
  tags:
    - gatk4/applyvqsr
    - gatk4
  files:
    - path: output/gatk4/test.vcf.gz
    - path: output/gatk4/test.vcf.gz.tbi
    - path: output/gatk4/versions.yml
      md5sum: 521353d12d576de2864f1d18a3e54f14
