name: legsta
description: Typing of clinical and environmental isolates of Legionella pneumophila
keywords:
  - bacteria
  - legionella
tools:
  - legsta:
      description: In silico Legionella pneumophila Sequence Based Typing
      homepage: https://github.com/tseemann/legsta
      documentation: https://github.com/tseemann/legsta
      tool_dev_url: https://github.com/tseemann/legsta
      doi: ""
      licence: ['GPL v3']

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - seqs:
      type: file
      description: FASTA, GenBank or EMBL formatted files
      pattern: "*.{fasta,gbk,embl}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - tsv:
      type: file
      description: Tab-delimited summary of the results
      pattern: "*.{tsv}"

authors:
  - "@rpetit3"
