- name: picard markduplicates sorted bam
  command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c tests/config/nextflow.config
  tags:
    - picard
    - picard/markduplicates
  files:
    - path: ./output/picard/test.MarkDuplicates.metrics.txt
    - path: ./output/picard/test.bam
      md5sum: b520ccdc3a9edf3c6a314983752881f2
- name: picard markduplicates unsorted bam
  command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c tests/config/nextflow.config
  tags:
    - picard
    - picard/markduplicates
  files:
    - path: ./output/picard/test.MarkDuplicates.metrics.txt
    - path: ./output/picard/test.bam
      md5sum: 46a6fc76048ba801d328f869ac9db020

