## TODO nf-core: Please run the following command to build this file:
#                nf-core modules create-test-yml samtools/ampliconclip
- name: samtools ampliconclip no stats no rejects
  command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_no_rejects -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/ampliconclip
  files:
    - path: output/samtools/test.bam
      md5sum: 1c705ebe39f68f1dac164733ae99c9d2

- name: samtools ampliconclip no stats with rejects
  command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_with_rejects -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/ampliconclip
  files:
    - path: output/samtools/test.bam
      md5sum: 86c7bfb5378d57b16855c5b399000b2a
    - path: output/samtools/test.cliprejects.bam
      md5sum: 8e2eea2c0005b4d4e77c0eb549599133

- name: samtools ampliconclip with stats with rejects
  command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_with_stats_with_rejects -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/ampliconclip
  files:
    - path: output/samtools/test.bam
      md5sum: d96f5eebef0ff4635e68090e89756d4a
    - path: output/samtools/test.cliprejects.bam
      md5sum: ad83a523d6ff1c58caade4ddafbaaed7
    - path: output/samtools/test.clipstats.txt
      md5sum: 6fbde83d658cd2813b79900d33800d1d
