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42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
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name: cooler_zoomify
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description: Generate a multi-resolution cooler file by coarsening
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keywords:
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- mcool
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tools:
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- cooler:
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description: Sparse binary format for genomic interaction matrices
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homepage: https://cooler.readthedocs.io/en/latest/index.html
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documentation: https://cooler.readthedocs.io/en/latest/index.html
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tool_dev_url: https://github.com/open2c/cooler
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doi: "10.1093/bioinformatics/btz540"
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licence: ['BSD-3-clause']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- cool:
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type: file
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description: Path to COOL file
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pattern: "*.{cool,mcool}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- mcool:
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type: file
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description: Output mcool file
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pattern: "*.mcool"
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authors:
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- "@jianhong"
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