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47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
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name: vcflib_vcfuniq
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description: List unique genotypes. Like GNU uniq, but for VCF records. Remove records which have the same position, ref, and alt as the previous record.
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keywords:
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- vcf
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- uniq
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- deduplicate
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tools:
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- vcflib:
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description: Command-line tools for manipulating VCF files
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homepage: https://github.com/vcflib/vcflib
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documentation: https://github.com/vcflib/vcflib#USAGE
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doi: "https://doi.org/10.1101/2021.05.21.445151"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: Compressed VCF file
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pattern: "*.vcf.gz"
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- tbi:
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type: file
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description: Index of VCF file
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pattern: "*.vcf.gz.tbi"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: Compressed VCF file
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pattern: "*.vcf.gz"
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authors:
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- "@drpatelh"
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