nf-core_modules/modules/hmmer/hmmalign/meta.yml

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name: hmmer_hmmalign
description: hmmalign from the HMMER suite aligns a number of sequences to an HMM profile
keywords:
- alignment
tools:
- hmmer:
description: Biosequence analysis using profile hidden Markov models
homepage: http://hmmer.org/
documentation: http://hmmer.org/documentation.html
tool_dev_url: None
doi: "http://dx.doi.org/10.1371/journal.pcbi.1002195"
licence: ['BSD-3-Clause']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- fasta:
type: file
description: Amino acid or nucleotide fasta file, gzipped or not
pattern: "*.{fna,fna.gz,faa,faa.gz,fasta,fasta.gz,fa,fa.gz}"
- hmm:
type: file
description: HMM file
pattern: "*.hmm"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- sthlm:
type: file
description: Multiple alignment in gzipped Stockholm format
pattern: "*.sthlm.gz"
authors:
- "@erikrikarddaniel"