mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
|
name: pirate
|
||
|
|
description: Pangenome toolbox for bacterial genomes
|
||
|
|
keywords:
|
||
|
|
- gff
|
||
|
|
- pan-genome
|
||
|
|
- alignment
|
||
|
|
tools:
|
||
|
|
- pirate:
|
||
|
|
description: Pangenome analysis and threshold evaluation toolbox
|
||
|
|
homepage: https://github.com/SionBayliss/PIRATE
|
||
|
|
documentation: https://github.com/SionBayliss/PIRATE/wiki
|
||
|
|
tool_dev_url: https://github.com/SionBayliss/PIRATE
|
||
|
|
doi: "https://doi.org/10.1093/gigascience/giz119"
|
||
|
|
licence: ['GPL v3']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- gff:
|
||
|
|
type: file
|
||
|
|
description: A set of GFF3 formatted files
|
||
|
|
pattern: "*.{gff}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- results:
|
||
|
|
type: directory
|
||
|
|
description: Directory containing PIRATE result files
|
||
|
|
pattern: "*/*"
|
||
|
|
- aln:
|
||
|
|
type: file
|
||
|
|
description: Core-genome alignment produced by PIRATE (Optional)
|
||
|
|
pattern: "*.{fasta}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@rpetit3"
|