mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
38 lines
1 KiB
YAML
38 lines
1 KiB
YAML
|
name: amrfinderplus_update
|
||
|
|
description: Identify antimicrobial resistance in gene or protein sequences
|
||
|
|
keywords:
|
||
|
|
- bacteria
|
||
|
|
- fasta
|
||
|
|
- antibiotic resistance
|
||
|
|
tools:
|
||
|
|
- amrfinderplus:
|
||
|
|
description: AMRFinderPlus finds antimicrobial resistance and other genes in protein or nucleotide sequences.
|
||
|
|
homepage: https://github.com/ncbi/amr/wiki
|
||
|
|
documentation: https://github.com/ncbi/amr/wiki
|
||
|
|
tool_dev_url: https://github.com/ncbi/amr
|
||
|
|
doi: "10.1038/s41598-021-91456-0"
|
||
|
|
licence: ['Public Domain']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- input_not_required:
|
||
|
|
type: null
|
||
|
|
description: module does not have an input
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- db:
|
||
|
|
type: file
|
||
|
|
description: The latest AMRFinder+ database in a compressed tarball
|
||
|
|
pattern: "*.tar.gz"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@rpetit3"
|