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44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
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name: hpsuissero
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description: Serotype prediction of Haemophilus parasuis assemblies
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keywords:
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- bacteria
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- fasta
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- haemophilus
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tools:
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- hpsuissero:
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description: Rapid Haemophilus parasuis serotyping pipeline for Nanpore data
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homepage: https://github.com/jimmyliu1326/HpsuisSero
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documentation: https://github.com/jimmyliu1326/HpsuisSero
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tool_dev_url: https://github.com/jimmyliu1326/HpsuisSero
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doi: ""
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Assembly in FASTA format
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pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,faa,faa.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- tsv:
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type: file
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description: Tab-delimited serotype prediction
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pattern: "*.{tsv}"
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authors:
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- "@rpetit3"
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