mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
|
name: imputeme_vcftoprs
|
||
|
|
description: inputs a VCF-file with whole genome DNA sequencing. Outputs a JSON with polygenic risk scores.
|
||
|
|
keywords:
|
||
|
|
- PRS, VCF
|
||
|
|
tools:
|
||
|
|
- imputeme:
|
||
|
|
description:
|
||
|
|
homepage: www.impute.me
|
||
|
|
documentation: https://hub.docker.com/repository/docker/lassefolkersen/impute-me
|
||
|
|
tool_dev_url: https://github.com/lassefolkersen/impute-me
|
||
|
|
doi: "https://doi.org/10.3389/fgene.2020.00578"
|
||
|
|
licence: LGPL3
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ vcf:'test', single_end:false ]
|
||
|
|
- vcf:
|
||
|
|
type: file
|
||
|
|
description: vcf file
|
||
|
|
pattern: "*.{vcf}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- json:
|
||
|
|
type: file
|
||
|
|
description: json containing Z-scores for all calculated PRS
|
||
|
|
pattern: "*.{json}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@lassefolkersen"
|