2021-05-19 07:37:08 +00:00
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name: last_train
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description: Find suitable score parameters for sequence alignment
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keywords:
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- LAST
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- train
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- fastq
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- fasta
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tools:
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- last:
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description: LAST finds & aligns related regions of sequences.
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homepage: https://gitlab.com/mcfrith/last
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documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/last-train.rst
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tool_dev_url: https://gitlab.com/mcfrith/last
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doi: ""
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2022-02-15 11:15:27 +00:00
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licence: ["GPL v3-or-later"]
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2021-05-19 07:37:08 +00:00
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input:
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- index:
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type: directory
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description: Directory containing the files of the LAST index
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pattern: "lastdb/"
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastx:
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type: file
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description: FASTA/FASTQ file
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pattern: "*.{fasta,fastq}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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2021-10-03 07:20:26 +00:00
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- versions:
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2021-05-19 07:37:08 +00:00
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type: file
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2021-10-03 07:20:26 +00:00
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description: File containing software versions
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2021-09-27 08:41:24 +00:00
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pattern: "versions.yml"
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2021-05-19 07:37:08 +00:00
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- param_file:
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type: file
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description: Trained parameter file
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pattern: "*.par"
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authors:
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- "@aleksandrabliznina"
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