2022-02-19 23:02:23 +00:00
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name: amrfinderplus_update
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description: Identify antimicrobial resistance in gene or protein sequences
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keywords:
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- bacteria
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- fasta
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- antibiotic resistance
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tools:
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- amrfinderplus:
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description: AMRFinderPlus finds antimicrobial resistance and other genes in protein or nucleotide sequences.
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homepage: https://github.com/ncbi/amr/wiki
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documentation: https://github.com/ncbi/amr/wiki
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tool_dev_url: https://github.com/ncbi/amr
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doi: "10.1038/s41598-021-91456-0"
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2022-03-18 13:27:50 +00:00
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licence: ["Public Domain"]
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2022-02-19 23:02:23 +00:00
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input:
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- input_not_required:
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type: null
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description: module does not have an input
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- db:
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type: file
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description: The latest AMRFinder+ database in a compressed tarball
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pattern: "*.tar.gz"
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authors:
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- "@rpetit3"
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